List of RNA structure prediction software

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This list of RNA structure prediction software is a compilation of software tools and web portals used for RNA structure prediction. rdf:langString

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rdf:langString List of RNA structure prediction software

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rdf:langString This list of RNA structure prediction software is a compilation of software tools and web portals used for RNA structure prediction.

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dbpedia:Category:Genetics-related_lists

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dbpedia:NUPACK

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dbpedia:Comparison_of_nucleic_acid_simulation_software

dbpedia:Comparison_of_software_for_molecular_mechanics_modeling

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<http://www.jalview.org/>

<ftp://selab.janelia.org/pub/software/rsearch/>

<http://130.235.46.10/ARAGORN/aragorn1.2.28.c>

<http://4sale.bioapps.biozentrum.uni-wuerzburg.de/>

<http://DECIPHER.codes/>

<http://EvryRNA.ibisc.univ-evry.fr/>

<http://bibiserv2.cebitec.uni-bielefeld.de/pkiss%3Fid=pkiss_view_submission>

<http://bibiwsserv.cebitec.uni-bielefeld.de/fold-grammars/>

<http://bioinformatics.bc.edu/clotelab/RNAiFold2.0/>

<http://biotech.bmi.ac.cn/ARDesigner>

<http://biowiki.org/XrateSoftware>

<http://bliss.biology.yale.edu/~zasha/ravenna/>

<http://cbit.snu.ac.kr/~miTarget/>

<http://ccmbweb.ccv.brown.edu/rnag.html>

<http://compbio.cs.sfu.ca/taverna/pirna/>

<http://contra.stanford.edu/contrafold/>

<http://crdd.osdd.net:8081/RISCbinder/>

<http://cylofold.abcc.ncifcrf.gov/>

<http://eddylab.org/R-scape/>

<http://eterna.cmu.edu/web/>

<http://evol.bio.lmu.de/_statgen/software/phyloqfold/>

<http://foldalign.ku.dk/software/>

<http://genome.ku.dk/resources/war/>

<http://gtfold.sourceforge.net/>

<http://iimcb.genesilico.pl/comparna/>

<http://infernal.janelia.org/>

<http://kinefold.curie.fr/>

<http://knetfold.abcc.ncifcrf.gov/>

<http://lowelab.ucsc.edu/tRNAscan-SE/>

<http://mastr.binf.ku.dk/>

<http://mfold.rit.albany.edu/%3Fq=mfold>

<http://mint.cent.uw.edu.pl/index.php%3Fstrona=MintRun>

<http://mostafa.ut.ac.ir/corna/erd-cons/>

<http://murlet.ncrna.org/murlet/murlet.html>

<http://mxscarna.ncrna.org/mxscarna/mxscarna.html>

<http://nupack.org/>

<http://phmmts.dna.bio.keio.ac.jp/>

<http://projects.binf.ku.dk/pgardner/bralibase/bralibase2.html>

<http://psb.stanford.edu/psb-online/proceedings/psb10/abstracts/2010_p69.html>

<http://ribomaker.jaramillolab.org/>

<http://rna-dv.sourceforge.net/>

<http://rna.eit.hirosaki-u.ac.jp/modena/>

<http://rna.igmors.u-psud.fr/erpin/>

<http://rna.informatik.uni-freiburg.de/CopraRNA/>

<http://rna.informatik.uni-freiburg.de:8080/LocARNA/>

<http://rna.urmc.rochester.edu/dynalign.html>

<http://rnabiology.ibr-conicet.gov.ar/comtar/>

<http://rnacomposer.cs.put.poznan.pl/>

<http://rnacomposer.ibch.poznan.pl/>

<http://rnamine.ncrna.org/RNAMINE/>

<http://rth.dk/resources/rilogo>

<http://rtips.dna.bio.keio.ac.jp/ractip/>

<http://rtools.cbrc.jp/>

<http://sarse.kvl.dk/>

<http://scbb.ihbt.res.in/SCBB_dept/Software.php>

<http://selab.janelia.org/software.html>

<http://sparks-lab.org/jaswinder/server/SPOT-RNA/>

<http://tagc.univ-mrs.fr/erpin/>

<http://tfold.ibisc.univ-evry.fr:8080/TFold/>

<http://theory.csail.mit.edu/MSARi>

<http://tiger.dbs.nus.edu.sg/microtar/>

<http://wilab.inha.ac.kr/pseudoviewer/>

<http://wingless.cs.washington.edu/htbin-post/unrestricted/CMfinderWeb/CMfinderInput.pl>

<http://www-lmmb.ncifcrf.gov/~bshapiro/software.html>

<http://www.bioinf.uni-freiburg.de/Software/antaRNA/>

<http://www.bioinf.uni-leipzig.de/~qin/resources/ripalign.tar.gz>

<http://www.biophys.uni-duesseldorf.de/stral/about.php>

<http://www.cbse.ucsc.edu/~jsp/EvoFold/>

<http://www.major.iric.ca/MC-Pipeline/>

<http://www.mybiosoftware.com/rna-analysis/12897>

<http://www.ncrna.org/software/centroidalign>

<http://www.proto.cs.huji.ac.il/mirror/index.php>

<http://www.rna123.com/>

<http://www.rnasoft.ca/rnadesign_about.html>

<http://www.scarna.org/scarna/>

<http://www.targetscan.org/>

<http://www.tcoffee.org/>

<http://www.viennarna.at/cgi-bin/RNAinverse.cgi>

<https://major.iric.ca/mirbooking/>

<https://mosslabtools.bb.iastate.edu/scanfold>

<https://sparks-lab.org/downloads/>

<https://yanglab.nankai.edu.cn/RNAsol/>

<http://rna.tbi.univie.ac.at/RNApredator2>

<http://rna.tbi.univie.ac.at/cgi-bin/RNAfold.cgi>

<http://rna.tbi.univie.ac.at/cgi-bin/RNAz.cgi>

<http://rna.tbi.univie.ac.at/cgi-bin/pmcgi.pl>

<http://rna.tbi.univie.ac.at/forna/>

<http://groups.csail.mit.edu/pag/mirnaminer/>

<http://personalpages.manchester.ac.uk/staff/sam.griffiths-jones/software/ralee/>

<http://bioinfo.lifl.fr/RNA/carnac/carnac.php>

<http://bioinfo.lifl.fr/RNA/carnac/index.php>

<http://www.cbs.dtu.dk/cgi-bin/nph-sw_request%3Frnammer>

<http://www.cbs.dtu.dk/services/RNAmmer/>

<https://rth.dk/resources/foldalign/>

<https://rth.dk/resources/foldalign/server/index.html>

<https://rth.dk/resources/foldalign/software/index.html>

<http://bio.cs.washington.edu/yzizhen/CMfinder/>

<http://ndbserver.rutgers.edu/services/>

<http://bibiserv.techfak.uni-bielefeld.de/download/tools/rnashapes.html>

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<http://bibiserv.techfak.uni-bielefeld.de/pknotsrg/submission.html>

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<http://bibiserv.techfak.uni-bielefeld.de/rnacast/>

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<http://bibiserv.techfak.uni-bielefeld.de/rnaforester/submission.html>

<http://bibiserv.techfak.uni-bielefeld.de/rnahybrid/>

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<http://genie.weizmann.ac.il/pubs/mir07/mir07_data.html>

<http://genie.weizmann.ac.il/pubs/mir07/mir07_exe.html>

<http://genie.weizmann.ac.il/pubs/mir07/mir07_prediction.html>

<http://www.bioinfo.rpi.edu/applications/hybrid/download.php>

<http://www.bioinfo.rpi.edu/applications/mfold/>

<http://www.iet.unipi.it/a.bechini/swispot/>

<http://www.tbi.univie.ac.at/RNA/>

<http://www.tbi.univie.ac.at/RNA/switch.html>

<http://www.tbi.univie.ac.at/papers/SUPPLEMENTS/Alifoldz/>

<http://www.tbi.univie.ac.at/~choener/rnadesign/>

<http://www.tbi.univie.ac.at/~ivo/RNA/>

<http://www.tbi.univie.ac.at/~ivo/RNA/PMcomp/>

<http://www.tbi.univie.ac.at/~wash/RNAz/>

<https://www.mi.fu-berlin.de/w/LiSA/>

<http://cm.jefferson.edu/>

<http://cm.jefferson.edu/rna22v2.0/>

<http://cm.jefferson.edu/rna22v2/>

<http://130.235.46.10/ARAGORN/>

<http://DECIPHER.codes/Downloads.html>

<http://bibiserv2.cebitec.uni-bielefeld.de/palikiss>

<http://bibiserv2.cebitec.uni-bielefeld.de/rnaalishapes>

<http://bioinformatics.bc.edu/clotelab/RNAiFold/>

<http://bioinformatics.bc.edu/clotelab/RNAiFold2.0/index.php%3Ftab=downloads>

<http://biowiki.org/RNAAlignmentViewers>

<http://biowiki.org/StemLoc>

<http://contra.stanford.edu/contrafold/server.html>

<http://genome.ku.dk/resources/petfold/>

<http://kinefold.curie.fr/cgi-bin/form.pl>

<http://lowelab.ucsc.edu/snoscan/>

<http://mostafa.ut.ac.ir/corna/erd-cons/Download.php>

<http://projects.binf.ku.dk/pgardner/bralibase/bralibase1.html>

<http://projects.binf.ku.dk/pgardner/bralibase/bralibase3>

<http://rna.informatik.uni-freiburg.de/AntaRNA/>

<http://rna.informatik.uni-freiburg.de/IntaRNA/>

<http://rna.urmc.rochester.edu/RNAstructure.html>

<http://rna.urmc.rochester.edu/RNAstructureWeb/>

<http://rtips.dna.bio.keio.ac.jp/ipknot/>

<http://scbb.ihbt.res.in/2810-12/miReader.php>

<http://scbb.ihbt.res.in/TAREF/programchoice.html>

<http://www-lmmb.ncifcrf.gov/~bshapiro/downloader_v1/register.php>

<http://www.bioinf.uni-freiburg.de/Software/%23CopraRNA-download>

<http://www.bioinf.uni-freiburg.de/Software/%23IntaRNA-download>

<http://www.bioinf.uni-freiburg.de/Software/GraphClust/>

<http://www.bioinf.uni-freiburg.de/Software/INFO-RNA/>

<http://www.bioinf.uni-freiburg.de/Software/LocARNA/>

<http://www.bioinf.uni-freiburg.de/Software/index.html%3Fen%23INFORNA-download>

<http://www.bioinf.uni-leipzig.de/~jana/software/RNAmicro.html>

<http://www.bioinf.uni-leipzig.de/~jana/software/SnoReport.html>

<http://www.biophys.uni-duesseldorf.de/bralibase/>

<http://www.biophys.uni-duesseldorf.de/stral/advancedForm.php>

<http://www.major.iric.ca/MajorLabEn/MC-Tools.html>

<http://www.ncrna.org/software/mxscarna/download/>

<http://www.targetscan.org/cgi-bin/targetscan/data_download.cgi%3Fdb=vert_60>

<http://www.tcoffee.org/Projects_home_page/r_coffee_home_page.html>

<https://major.iric.ca/~poirigui/mirbooking-scan/>

<https://sparks-lab.org/server/rnasnap2/>

<http://comparna.amu.edu.pl>

<http://cupidtool.sourceforge.net>

<http://eternabot.org>

<http://herberttsang.org>

<http://iFoldRNA.dokhlab.org>

<http://rna.urmc.rochester.edu>

<http://sfold.wadsworth.org>

<http://varna.lri.fr>

<http://www.rna.it-chiba.ac.jp>

<http://sourceforge.net/projects/barnacle-rna/>

<http://sourceforge.net/projects/mireader/>

<http://sourceforge.net/projects/ribomaker/>

<http://www.ebi.ac.uk/enright/sylamer/>

<http://www.ebi.ac.uk/enright/sylarray/>

<https://archive.today/20141014170648/http:/bioinformatics.oxfordjournals.org/content/early/2014/01/08/bioinformatics.btu001.abstract>

<https://github.com/Lattice-Automation/seqfold>

<https://github.com/McGill-CSB/IncaRNAtion>

<https://github.com/ViennaRNA/RNAblueprint>

<https://github.com/fernandomeyer/RaligNAtor>

<https://github.com/fernandomeyer/Structator>

<https://github.com/gtfold/gtfold/>

<https://github.com/gvalchca/MINT>

<https://github.com/jaswindersingh2/RNAsnap2>

<https://github.com/jaswindersingh2/SPOT-RNA>

<https://github.com/marcom/dss-opt>

<https://github.com/ml4bio/e2efold>

<https://github.com/moss-lab/ScanFold>

<https://github.com/pkerpedjiev/forna>

<https://github.com/pkerpedjiev/fornac>

<https://github.com/satoken/centroid-rna-package>

<https://github.com/satoken/dafs>

<https://github.com/satoken/ipknot>

<https://github.com/satoken/ractip>

<https://sourceforge.net/projects/weinberg-r2r/>

<https://web.archive.org/web/20080724163022/http:/pictar.bio.nyu.edu/>

<https://web.archive.org/web/20100609233409/http:/ural.wustl.edu/~xingxu/RNASampler/>

<https://web.archive.org/web/20101208180159/http:/diana.cslab.ece.ntua.gr/microT/>

<https://web.archive.org/web/20120510145232/http:/www.daimi.au.dk/~compbio/rnafold/>

<http://www.cs.ubc.ca/~irmtraud/simulfold/>

<http://www.stats.ox.ac.uk/research/genome/software/frnakenstein>

<http://www.cs.bgu.ac.il/~RNAexinv/>

<http://www.cs.bgu.ac.il/~negevcb/FRUUT/>

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<http://www.cs.bgu.ac.il/~negevcb/contextfold/>

<http://www.cs.bgu.ac.il/~negevcb/contextfold/ContextFold_1_00.zip>

<https://simtk.org/home/nast>

<https://simtk.org/home/rnatoolbox>

<http://www.jefferson.edu>

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data from the linked data cloud